Package: ripserr 0.3.0

Jason Cory Brunson

ripserr: Calculate Persistent Homology with Ripser-Based Engines

Ports the Ripser <https://arxiv.org/abs/1908.02518> and Cubical Ripser <https://arxiv.org/abs/2005.12692> persistent homology calculation engines from C++. Can be used as a rapid calculation tool in topological data analysis pipelines.

Authors:Raoul Wadhwa [aut], Matt Piekenbrock [aut], Jacob Scott [aut], Jason Cory Brunson [aut, cre], Emily Noble [ctb], Takeki Sudo [cph, ctb], Kazushi Ahara [cph, ctb], Ulrich Bauer [cph, ctb], Xinyi Zhang [aut]

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ripserr.pdf |ripserr.html✨
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# Install 'ripserr' in R:
install.packages('ripserr', repos = c('https://tdaverse.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tdaverse/ripserr/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • aegypti - _Aedes aegypti_ occurrences in Brazil in 2013
  • case_predictors - State-level predictors of mosquito-borne illness in Brazil

On CRAN:

Conda:

algebraic-topologycohomologycppcubical-complexpersistent-homologypixelpoint-cloudr-languager-programmingrcpprips-complexripsersimplicial-complexsimplicial-homologytopological-data-analysistopologyvietoris-complexvoxelcpp

5.98 score 7 stars 6 scripts 146 downloads 13 exports 1 dependencies

Last updated 5 days agofrom:bcc6c0a13c. Checks:1 OK, 11 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 17 2025
R-4.5-win-x86_64NOTEMar 17 2025
R-4.5-mac-x86_64NOTEMar 17 2025
R-4.5-mac-aarch64NOTEMar 17 2025
R-4.5-linux-x86_64NOTEMar 17 2025
R-4.4-win-x86_64NOTEMar 17 2025
R-4.4-mac-x86_64NOTEMar 17 2025
R-4.4-mac-aarch64NOTEMar 17 2025
R-4.4-linux-x86_64NOTEMar 17 2025
R-4.3-win-x86_64NOTEMar 17 2025
R-4.3-mac-x86_64NOTEMar 17 2025
R-4.3-mac-aarch64NOTEMar 17 2025

Exports:as.PHomcubicalcubical.arraycubical.matrixis.PHomPHomvietoris_ripsvietoris_rips.data.framevietoris_rips.defaultvietoris_rips.distvietoris_rips.matrixvietoris_rips.numericvietoris_rips.ts

Dependencies:Rcpp

Calculating Persistent Homology with a Cubical Complex

Raoul R. Wadhwa, Jacob G. Scott

Rendered fromcubical.Rmdusingknitr::rmarkdownon Mar 17 2025.

Last update: 2025-03-17
Started: 2020-08-31

Calculating Persistent Homology with a Vietoris-Rips Complex

Raoul R. Wadhwa, Matthew Piekenbrock, Jacob G. Scott

Rendered fromvietoris-rips.Rmdusingknitr::rmarkdownon Mar 17 2025.

Last update: 2025-03-17
Started: 2020-08-31

Modeling Cases of Mosquito-Borne Disease Using Persistent Homology

Xinyi Zhang, Jason Cory Brunson

Rendered frommodeling-disease-using-PH.Rmdusingknitr::rmarkdownon Mar 17 2025.

Last update: 2025-03-17
Started: 2021-11-29