Package: interplex 0.1.2

Jason Cory Brunson

interplex: Coercion Methods for Simplicial Complex Data Structures

Computational topology, which enables topological data analysis (TDA), makes pervasive use of abstract mathematical objects called simplicial complexes; see Edelsbrunner and Harer (2010) <doi:10.1090/mbk/069>. Several R packages and other software libraries used through an R interface construct and use data structures that represent simplicial complexes, including mathematical graphs viewed as 1-dimensional complexes. This package provides coercers (converters) between these data structures. Currently supported structures are complete lists of simplices as used by 'TDA'; the simplex trees of Boissonnat and Maria (2014) <doi:10.1007/s00453-014-9887-3> as implemented in 'simplextree' and in Python GUDHI (by way of 'reticulate'); and the graph classes of 'igraph' and 'network', by way of the 'intergraph' package.

Authors:Jason Cory Brunson [aut, cre], Yara Skaf [ctb]

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interplex.pdf |interplex.html
interplex/json (API)
NEWS

# Install 'interplex' in R:
install.packages('interplex', repos = c('https://tdaverse.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/tdaverse/interplex/issues

On CRAN:

5 exports 1 stars 0.93 score 29 dependencies 183 downloads

Last updated 7 months agofrom:ebac881c85. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 18 2024
R-4.5-winOKSep 18 2024
R-4.5-linuxOKSep 18 2024
R-4.4-winOKSep 18 2024
R-4.4-macOKSep 18 2024
R-4.3-winOKSep 18 2024
R-4.3-macOKSep 18 2024

Exports:as_cmplxas_igraphas_networkas_py_gudhi_simplextreeas_rcpp_simplextree

Dependencies:clicodacpp11fansigluehereigraphintergraphjsonlitelatticelifecyclemagrittrMatrixnetworkpillarpkgconfigpngrappdirsRcppRcppTOMLreticulaterlangrprojrootsimplextreestatnet.commontibbleutf8vctrswithr

Readme and manuals

Help Manual

Help pageTopics
Coerce objects to lists of simplicesas_cmplx as_cmplx.default as_cmplx.gudhi.simplex_tree.SimplexTree as_cmplx.igraph as_cmplx.network as_cmplx.Rcpp_SimplexTree
Coerce objects to class 'igraph'as_igraph as_igraph.default as_igraph.gudhi.simplex_tree.SimplexTree as_igraph.igraph as_igraph.network as_igraph.Rcpp_SimplexTree
Coerce objects to class 'network'as_network as_network.default as_network.gudhi.simplex_tree.SimplexTree as_network.igraph as_network.network as_network.Rcpp_SimplexTree
Coerce objects to Python GUDHI simplex treesas_py_gudhi_simplextree as_py_gudhi_simplextree.default as_py_gudhi_simplextree.igraph as_py_gudhi_simplextree.network as_py_gudhi_simplextree.Rcpp_SimplexTree
Coerce objects to class 'Rcpp_SimplexTree'as_rcpp_simplextree as_rcpp_simplextree.default as_rcpp_simplextree.gudhi.simplex_tree.SimplexTree as_rcpp_simplextree.igraph as_rcpp_simplextree.network as_rcpp_simplextree.Rcpp_SimplexTree
*interplex* packageinterplex-package interplex