Package: inphr 0.0.1
inphr: Statistical Inference for Persistence Homology Data
A set of functions for performing null hypothesis testing on samples of persistence diagrams using the theory of permutations. Currently, only two-sample testing is implemented. Inputs can be either samples of persistence diagrams themselves or vectorizations. In the former case, they are embedded in a metric space using either the Bottleneck or Wasserstein distance. In the former case, persistence data becomes functional data and inference is performed using tools available in the 'fdatest' package. Main reference for the interval-wise testing method: Pini A., Vantini S. (2017) "Interval-wise testing for functional data" <doi:10.1080/10485252.2017.1306627>. Main reference for inference on populations of networks: Lovato, I., Pini, A., Stamm, A., & Vantini, S. (2020) "Model-free two-sample test for network-valued data" <doi:10.1016/j.csda.2019.106896>.
Authors:
inphr_0.0.1.tar.gz
inphr_0.0.1.zip(r-4.7)inphr_0.0.1.zip(r-4.6)inphr_0.0.1.zip(r-4.5)
inphr_0.0.1.tgz(r-4.6-any)inphr_0.0.1.tgz(r-4.5-any)
inphr_0.0.1.tar.gz(r-4.7-any)inphr_0.0.1.tar.gz(r-4.6-any)
inphr_0.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
inphr/json (API)
| # Install 'inphr' in R: |
| install.packages('inphr', repos = c('https://tdaverse.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/tdaverse/inphr/issues
Pkgdown/docs site:https://tdaverse.github.io
- archspirals - Persistence diagrams from Archimedean spiral samples
- trefoils1 - Persistence diagrams from trefoil knot samples
- trefoils2 - Persistence diagrams from trefoil knot samples
Last updated from:98b6a3e6a0. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 204 | ||
| source / vignettes | OK | 178 | ||
| linux-release-x86_64 | OK | 208 | ||
| macos-release-arm64 | OK | 182 | ||
| macos-oldrel-arm64 | OK | 1525 | ||
| windows-devel | OK | 369 | ||
| windows-release | OK | 333 | ||
| windows-oldrel | OK | 418 | ||
| wasm-release | OK | 130 |
Exports:two_sample_diagram_testtwo_sample_functional_test
Dependencies:ashaskpassBHbitopsclicliprclustercolorspacecpp11crayoncredentialscurldescdeSolvedialsDiceDesigndplyrfarverfdafdatestfdsfliprFNNfsgenericsgertggplot2gitcredsgluegtablehardhathdrcdehttr2iniisobandjsonlitekernlabKernSmoothkslabelinglatticelifecyclelocfitmagrittrMASSMatrixmclustmgcvmulticoolmvtnormnlmeopenssloptimParallelpbapplypcaPPphutilpillarpkgconfigpracmapurrrR6rainbowrappdirsRColorBrewerRcppRcppArmadilloRCurlrgenoudrlangrprojrootrstudioapiS7scalessfdsparsevctrssysTDAvectibbletidyselectusethisutf8vctrsviridisLitewhiskerwithryamlzip
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Persistence diagrams from Archimedean spiral samples | archspirals |
| Persistence diagrams from trefoil knot samples (first set) | trefoils1 |
| Persistence diagrams from trefoil knot samples (second set) | trefoils2 |
| Two-sample test for diagram representation of persistence homology data | two_sample_diagram_test |
| Two-sample test for functional representations of persistence homology data | two_sample_functional_test |
