Package: inphr 0.0.1

Aymeric Stamm

inphr: Statistical Inference for Persistence Homology Data

A set of functions for performing null hypothesis testing on samples of persistence diagrams using the theory of permutations. Currently, only two-sample testing is implemented. Inputs can be either samples of persistence diagrams themselves or vectorizations. In the former case, they are embedded in a metric space using either the Bottleneck or Wasserstein distance. In the former case, persistence data becomes functional data and inference is performed using tools available in the 'fdatest' package. Main reference for the interval-wise testing method: Pini A., Vantini S. (2017) "Interval-wise testing for functional data" <doi:10.1080/10485252.2017.1306627>. Main reference for inference on populations of networks: Lovato, I., Pini, A., Stamm, A., & Vantini, S. (2020) "Model-free two-sample test for network-valued data" <doi:10.1016/j.csda.2019.106896>.

Authors:Aymeric Stamm [aut, cre]

inphr_0.0.1.tar.gz
inphr_0.0.1.zip(r-4.7)inphr_0.0.1.zip(r-4.6)inphr_0.0.1.zip(r-4.5)
inphr_0.0.1.tgz(r-4.6-any)inphr_0.0.1.tgz(r-4.5-any)
inphr_0.0.1.tar.gz(r-4.7-any)inphr_0.0.1.tar.gz(r-4.6-any)
inphr_0.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
inphr/json (API)

# Install 'inphr' in R:
install.packages('inphr', repos = c('https://tdaverse.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tdaverse/inphr/issues

Pkgdown/docs site:https://tdaverse.github.io

Datasets:
  • archspirals - Persistence diagrams from Archimedean spiral samples
  • trefoils1 - Persistence diagrams from trefoil knot samples
  • trefoils2 - Persistence diagrams from trefoil knot samples

On CRAN:

Conda:

3.18 score 1 stars 7 scripts 179 downloads 2 exports 87 dependencies

Last updated from:98b6a3e6a0. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK204
source / vignettesOK178
linux-release-x86_64OK208
macos-release-arm64OK182
macos-oldrel-arm64OK1525
windows-develOK369
windows-releaseOK333
windows-oldrelOK418
wasm-releaseOK130

Exports:two_sample_diagram_testtwo_sample_functional_test

Dependencies:ashaskpassBHbitopsclicliprclustercolorspacecpp11crayoncredentialscurldescdeSolvedialsDiceDesigndplyrfarverfdafdatestfdsfliprFNNfsgenericsgertggplot2gitcredsgluegtablehardhathdrcdehttr2iniisobandjsonlitekernlabKernSmoothkslabelinglatticelifecyclelocfitmagrittrMASSMatrixmclustmgcvmulticoolmvtnormnlmeopenssloptimParallelpbapplypcaPPphutilpillarpkgconfigpracmapurrrR6rainbowrappdirsRColorBrewerRcppRcppArmadilloRCurlrgenoudrlangrprojrootrstudioapiS7scalessfdsparsevctrssysTDAvectibbletidyselectusethisutf8vctrsviridisLitewhiskerwithryamlzip