Package: inphr 0.0.1

Aymeric Stamm

inphr: Statistical Inference for Persistence Homology Data

A set of functions for performing null hypothesis testing on samples of persistence diagrams using the theory of permutations. Currently, only two-sample testing is implemented. Inputs can be either samples of persistence diagrams themselves or vectorizations. In the former case, they are embedded in a metric space using either the Bottleneck or Wasserstein distance. In the former case, persistence data becomes functional data and inference is performed using tools available in the 'fdatest' package. Main reference for the interval-wise testing method: Pini A., Vantini S. (2017) "Interval-wise testing for functional data" <doi:10.1080/10485252.2017.1306627>. Main reference for inference on populations of networks: Lovato, I., Pini, A., Stamm, A., & Vantini, S. (2020) "Model-free two-sample test for network-valued data" <doi:10.1016/j.csda.2019.106896>.

Authors:Aymeric Stamm [aut, cre]

inphr_0.0.1.tar.gz
inphr_0.0.1.zip(r-4.7-any)inphr_0.0.1.zip(r-4.6-any)inphr_0.0.1.zip(r-4.5-any)
inphr_0.0.1.tgz(r-4.6-any)inphr_0.0.1.tgz(r-4.5-any)
inphr_0.0.1.tar.gz(r-4.7-any)inphr_0.0.1.tar.gz(r-4.6-any)
inphr_0.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
inphr/json (API)

# Install 'inphr' in R:
install.packages('inphr', repos = c('https://tdaverse.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tdaverse/inphr/issues

Pkgdown/docs site:https://tdaverse.github.io

Datasets:
  • archspirals - Persistence diagrams from Archimedean spiral samples
  • trefoils1 - Persistence diagrams from trefoil knot samples
  • trefoils2 - Persistence diagrams from trefoil knot samples

On CRAN:

Conda:

2.70 score 1 stars 9 scripts 252 downloads 2 exports 88 dependencies

Last updated from:98b6a3e6a0. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK249
source / vignettesOK196
linux-releaseOK198
macos-releaseOK191
macos-oldrelOK157
windows-develOK327
windows-releaseOK237
windows-oldrelOK224
wasm-releaseOK118

Exports:two_sample_diagram_testtwo_sample_functional_test

Dependencies:ashaskpassBHbitopsclicliprclustercolorspacecpp11crayoncredentialscurldescdeSolvedialsDiceDesigndplyrfarverfdafdatestfdsfliprFNNfsgenericsgertggplot2gitcredsgluegtablehardhathdrcdehttr2iniisobandjsonlitekernlabKernSmoothkslabelinglatticelifecyclelocfitmagrittrMASSMatrixmclustmgcvmulticoolmvtnormnlmeopenssloptimParallelpakpbapplypcaPPphutilpillarpkgconfigpracmapurrrR6rainbowrappdirsRColorBrewerRcppRcppArmadilloRCurlrgenoudrlangrprojrootrstudioapiS7scalessfdsparsevctrssysTDAvectibbletidyselectusethisutf8vctrsviridisLitewhiskerwithryamlzip